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r""" Solving ordinary differential equations
This file contains functions useful for solving differential equations which occur commonly in a 1st semester differential equations course. For another numerical solver see the :meth:`ode_solver` function and the optional package Octave.
Solutions from the Maxima package can contain the three constants ``_C``, ``_K1``, and ``_K2`` where the underscore is used to distinguish them from symbolic variables that the user might have used. You can substitute values for them, and make them into accessible usable symbolic variables, for example with ``var("_C")``.
Commands:
- :func:`desolve` - Compute the "general solution" to a 1st or 2nd order ODE via Maxima.
- :func:`desolve_laplace` - Solve an ODE using Laplace transforms via Maxima. Initial conditions are optional.
- :func:`desolve_rk4` - Solve numerically an IVP for one first order equation, return list of points or plot.
- :func:`desolve_system_rk4` - Solve numerically an IVP for a system of first order equations, return list of points.
- :func:`desolve_odeint` - Solve numerically a system of first-order ordinary differential equations using ``odeint`` from `scipy.integrate module. <https://docs.scipy.org/doc/scipy/reference/integrate.html#module-scipy.integrate>`_
- :func:`desolve_system` - Solve a system of 1st order ODEs of any size using Maxima. Initial conditions are optional.
- :func:`eulers_method` - Approximate solution to a 1st order DE, presented as a table.
- :func:`eulers_method_2x2` - Approximate solution to a 1st order system of DEs, presented as a table.
- :func:`eulers_method_2x2_plot` - Plot the sequence of points obtained from Euler's method.
The following functions require the optional package ``tides``:
- :func:`desolve_mintides` - Numerical solution of a system of 1st order ODEs via the Taylor series integrator method implemented in TIDES.
- :func:`desolve_tides_mpfr` - Arbitrary precision Taylor series integrator implemented in TIDES.
AUTHORS:
- David Joyner (3-2006) - Initial version of functions
- Marshall Hampton (7-2007) - Creation of Python module and testing
- Robert Bradshaw (10-2008) - Some interface cleanup.
- Robert Marik (10-2009) - Some bugfixes and enhancements
- Miguel Marco (06-2014) - Tides desolvers
"""
########################################################################## # Copyright (C) 2006 David Joyner <wdjoyner@gmail.com>, Marshall Hampton, # Robert Marik <marik@mendelu.cz> # # Distributed under the terms of the GNU General Public License (GPL): # # http://www.gnu.org/licenses/ ########################################################################## from __future__ import division
from sage.interfaces.maxima import Maxima from sage.plot.all import line from sage.symbolic.expression import is_SymbolicEquation from sage.symbolic.ring import is_SymbolicVariable from sage.calculus.functional import diff from sage.misc.functional import N from sage.misc.decorators import rename_keyword from tempfile import mkdtemp import shutil import os from sage.rings.real_mpfr import RealField
maxima = Maxima()
def desolve(de, dvar, ics=None, ivar=None, show_method=False, contrib_ode=False): r""" Solves a 1st or 2nd order linear ODE via Maxima, including IVP and BVP.
INPUT:
- ``de`` - an expression or equation representing the ODE
- ``dvar`` - the dependent variable (hereafter called `y`)
- ``ics`` - (optional) the initial or boundary conditions
- for a first-order equation, specify the initial `x` and `y`
- for a second-order equation, specify the initial `x`, `y`, and `dy/dx`, i.e. write `[x_0, y(x_0), y'(x_0)]`
- for a second-order boundary solution, specify initial and final `x` and `y` boundary conditions, i.e. write `[x_0, y(x_0), x_1, y(x_1)]`.
- gives an error if the solution is not SymbolicEquation (as happens for example for a Clairaut equation)
- ``ivar`` - (optional) the independent variable (hereafter called `x`), which must be specified if there is more than one independent variable in the equation.
- ``show_method`` - (optional) if true, then Sage returns pair ``[solution, method]``, where method is the string describing the method which has been used to get a solution (Maxima uses the following order for first order equations: linear, separable, exact (including exact with integrating factor), homogeneous, bernoulli, generalized homogeneous) - use carefully in class, see below the example of an equation which is separable but this property is not recognized by Maxima and the equation is solved as exact.
- ``contrib_ode`` - (optional) if true, ``desolve`` allows to solve Clairaut, Lagrange, Riccati and some other equations. This may take a long time and is thus turned off by default. Initial conditions can be used only if the result is one SymbolicEquation (does not contain a singular solution, for example).
OUTPUT:
In most cases return a SymbolicEquation which defines the solution implicitly. If the result is in the form `y(x)=\ldots` (happens for linear eqs.), return the right-hand side only. The possible constant solutions of separable ODEs are omitted.
NOTES:
Use ``desolve? <tab>`` if the output in the Sage notebook is truncated.
EXAMPLES::
sage: x = var('x') sage: y = function('y')(x) sage: desolve(diff(y,x) + y - 1, y) (_C + e^x)*e^(-x)
::
sage: f = desolve(diff(y,x) + y - 1, y, ics=[10,2]); f (e^10 + e^x)*e^(-x)
::
sage: plot(f) Graphics object consisting of 1 graphics primitive
We can also solve second-order differential equations::
sage: x = var('x') sage: y = function('y')(x) sage: de = diff(y,x,2) - y == x sage: desolve(de, y) _K2*e^(-x) + _K1*e^x - x
::
sage: f = desolve(de, y, [10,2,1]); f -x + 7*e^(x - 10) + 5*e^(-x + 10)
::
sage: f(x=10) 2
::
sage: diff(f,x)(x=10) 1
::
sage: de = diff(y,x,2) + y == 0 sage: desolve(de, y) _K2*cos(x) + _K1*sin(x)
::
sage: desolve(de, y, [0,1,pi/2,4]) cos(x) + 4*sin(x)
::
sage: desolve(y*diff(y,x)+sin(x)==0,y) -1/2*y(x)^2 == _C - cos(x)
Clairaut equation: general and singular solutions::
sage: desolve(diff(y,x)^2+x*diff(y,x)-y==0,y,contrib_ode=True,show_method=True) [[y(x) == _C^2 + _C*x, y(x) == -1/4*x^2], 'clairault']
For equations involving more variables we specify an independent variable::
sage: a,b,c,n=var('a b c n') sage: desolve(x^2*diff(y,x)==a+b*x^n+c*x^2*y^2,y,ivar=x,contrib_ode=True) [[y(x) == 0, (b*x^(n - 2) + a/x^2)*c^2*u == 0]]
::
sage: desolve(x^2*diff(y,x)==a+b*x^n+c*x^2*y^2,y,ivar=x,contrib_ode=True,show_method=True) [[[y(x) == 0, (b*x^(n - 2) + a/x^2)*c^2*u == 0]], 'riccati']
Higher order equations, not involving independent variable::
sage: desolve(diff(y,x,2)+y*(diff(y,x,1))^3==0,y).expand() 1/6*y(x)^3 + _K1*y(x) == _K2 + x
::
sage: desolve(diff(y,x,2)+y*(diff(y,x,1))^3==0,y,[0,1,1,3]).expand() 1/6*y(x)^3 - 5/3*y(x) == x - 3/2
::
sage: desolve(diff(y,x,2)+y*(diff(y,x,1))^3==0,y,[0,1,1,3],show_method=True) [1/6*y(x)^3 - 5/3*y(x) == x - 3/2, 'freeofx']
Separable equations - Sage returns solution in implicit form::
sage: desolve(diff(y,x)*sin(y) == cos(x),y) -cos(y(x)) == _C + sin(x)
::
sage: desolve(diff(y,x)*sin(y) == cos(x),y,show_method=True) [-cos(y(x)) == _C + sin(x), 'separable']
::
sage: desolve(diff(y,x)*sin(y) == cos(x),y,[pi/2,1]) -cos(y(x)) == -cos(1) + sin(x) - 1
Linear equation - Sage returns the expression on the right hand side only::
sage: desolve(diff(y,x)+(y) == cos(x),y) 1/2*((cos(x) + sin(x))*e^x + 2*_C)*e^(-x)
::
sage: desolve(diff(y,x)+(y) == cos(x),y,show_method=True) [1/2*((cos(x) + sin(x))*e^x + 2*_C)*e^(-x), 'linear']
::
sage: desolve(diff(y,x)+(y) == cos(x),y,[0,1]) 1/2*(cos(x)*e^x + e^x*sin(x) + 1)*e^(-x)
This ODE with separated variables is solved as exact. Explanation - factor does not split `e^{x-y}` in Maxima into `e^{x}e^{y}`::
sage: desolve(diff(y,x)==exp(x-y),y,show_method=True) [-e^x + e^y(x) == _C, 'exact']
You can solve Bessel equations, also using initial conditions, but you cannot put (sometimes desired) the initial condition at `x=0`, since this point is a singular point of the equation. Anyway, if the solution should be bounded at `x=0`, then _K2=0.::
sage: desolve(x^2*diff(y,x,x)+x*diff(y,x)+(x^2-4)*y==0,y) _K1*bessel_J(2, x) + _K2*bessel_Y(2, x)
Example of difficult ODE producing an error::
sage: desolve(sqrt(y)*diff(y,x)+e^(y)+cos(x)-sin(x+y)==0,y) # not tested Traceback (click to the left for traceback) ... NotImplementedError, "Maxima was unable to solve this ODE. Consider to set option contrib_ode to True."
Another difficult ODE with error - moreover, it takes a long time ::
sage: desolve(sqrt(y)*diff(y,x)+e^(y)+cos(x)-sin(x+y)==0,y,contrib_ode=True) # not tested
Some more types of ODEs::
sage: desolve(x*diff(y,x)^2-(1+x*y)*diff(y,x)+y==0,y,contrib_ode=True,show_method=True) [[y(x) == _C + log(x), y(x) == _C*e^x], 'factor']
::
sage: desolve(diff(y,x)==(x+y)^2,y,contrib_ode=True,show_method=True) [[[x == _C - arctan(sqrt(t)), y(x) == -x - sqrt(t)], [x == _C + arctan(sqrt(t)), y(x) == -x + sqrt(t)]], 'lagrange']
These two examples produce an error (as expected, Maxima 5.18 cannot solve equations from initial conditions). Maxima 5.18 returns false answer in this case!::
sage: desolve(diff(y,x,2)+y*(diff(y,x,1))^3==0,y,[0,1,2]).expand() # not tested Traceback (click to the left for traceback) ... NotImplementedError, "Maxima was unable to solve this ODE. Consider to set option contrib_ode to True."
::
sage: desolve(diff(y,x,2)+y*(diff(y,x,1))^3==0,y,[0,1,2],show_method=True) # not tested Traceback (click to the left for traceback) ... NotImplementedError, "Maxima was unable to solve this ODE. Consider to set option contrib_ode to True."
Second order linear ODE::
sage: desolve(diff(y,x,2)+2*diff(y,x)+y == cos(x),y) (_K2*x + _K1)*e^(-x) + 1/2*sin(x)
::
sage: desolve(diff(y,x,2)+2*diff(y,x)+y == cos(x),y,show_method=True) [(_K2*x + _K1)*e^(-x) + 1/2*sin(x), 'variationofparameters']
::
sage: desolve(diff(y,x,2)+2*diff(y,x)+y == cos(x),y,[0,3,1]) 1/2*(7*x + 6)*e^(-x) + 1/2*sin(x)
::
sage: desolve(diff(y,x,2)+2*diff(y,x)+y == cos(x),y,[0,3,1],show_method=True) [1/2*(7*x + 6)*e^(-x) + 1/2*sin(x), 'variationofparameters']
::
sage: desolve(diff(y,x,2)+2*diff(y,x)+y == cos(x),y,[0,3,pi/2,2]) 3*(x*(e^(1/2*pi) - 2)/pi + 1)*e^(-x) + 1/2*sin(x)
::
sage: desolve(diff(y,x,2)+2*diff(y,x)+y == cos(x),y,[0,3,pi/2,2],show_method=True) [3*(x*(e^(1/2*pi) - 2)/pi + 1)*e^(-x) + 1/2*sin(x), 'variationofparameters']
::
sage: desolve(diff(y,x,2)+2*diff(y,x)+y == 0,y) (_K2*x + _K1)*e^(-x)
::
sage: desolve(diff(y,x,2)+2*diff(y,x)+y == 0,y,show_method=True) [(_K2*x + _K1)*e^(-x), 'constcoeff']
::
sage: desolve(diff(y,x,2)+2*diff(y,x)+y == 0,y,[0,3,1]) (4*x + 3)*e^(-x)
::
sage: desolve(diff(y,x,2)+2*diff(y,x)+y == 0,y,[0,3,1],show_method=True) [(4*x + 3)*e^(-x), 'constcoeff']
::
sage: desolve(diff(y,x,2)+2*diff(y,x)+y == 0,y,[0,3,pi/2,2]) (2*x*(2*e^(1/2*pi) - 3)/pi + 3)*e^(-x)
::
sage: desolve(diff(y,x,2)+2*diff(y,x)+y == 0,y,[0,3,pi/2,2],show_method=True) [(2*x*(2*e^(1/2*pi) - 3)/pi + 3)*e^(-x), 'constcoeff']
TESTS:
:trac:`9961` fixed (allow assumptions on the dependent variable in desolve)::
sage: y=function('y')(x); assume(x>0); assume(y>0) sage: sage.calculus.calculus.maxima('domain:real') # needed since Maxima 5.26.0 to get the answer as below real sage: desolve(x*diff(y,x)-x*sqrt(y^2+x^2)-y == 0, y, contrib_ode=True) [x - arcsinh(y(x)/x) == _C]
:trac:`10682` updated Maxima to 5.26, and it started to show a different solution in the complex domain for the ODE above::
sage: forget() sage: sage.calculus.calculus.maxima('domain:complex') # back to the default complex domain complex sage: assume(x>0) sage: assume(y>0) sage: desolve(x*diff(y,x)-x*sqrt(y^2+x^2)-y == 0, y, contrib_ode=True) [x - arcsinh(y(x)^2/(x*sqrt(y(x)^2))) - arcsinh(y(x)/x) + 1/2*log(4*(x^2 + 2*y(x)^2 + 2*sqrt(x^2*y(x)^2 + y(x)^4))/x^2) == _C]
:trac:`6479` fixed::
sage: x = var('x') sage: y = function('y')(x) sage: desolve( diff(y,x,x) == 0, y, [0,0,1]) x
::
sage: desolve( diff(y,x,x) == 0, y, [0,1,1]) x + 1
:trac:`9835` fixed::
sage: x = var('x') sage: y = function('y')(x) sage: desolve(diff(y,x,2)+y*(1-y^2)==0,y,[0,-1,1,1]) Traceback (most recent call last): ... NotImplementedError: Unable to use initial condition for this equation (freeofx).
:trac:`8931` fixed::
sage: x=var('x'); f=function('f')(x); k=var('k'); assume(k>0) sage: desolve(diff(f,x,2)/f==k,f,ivar=x) _K1*e^(sqrt(k)*x) + _K2*e^(-sqrt(k)*x)
:trac:`15775` fixed::
sage: forget() sage: y = function('y')(x) sage: desolve(diff(y, x) == sqrt(abs(y)), dvar=y, ivar=x) sqrt(-y(x))*(sgn(y(x)) - 1) + (sgn(y(x)) + 1)*sqrt(y(x)) == _C + x
AUTHORS:
- David Joyner (1-2006)
- Robert Bradshaw (10-2008)
- Robert Marik (10-2009)
""" raise ValueError("You have to declare dependent variable as a function evaluated at the independent variable, eg. y=function('y')(x)") # for backwards compatibility raise ValueError("Unable to determine independent variable, please specify.") # we produce string like this # ode2('diff(y,x,2)+2*'diff(y,x,1)+y-cos(x),y(x),x)
# we produce string like this # (TEMP:contrib_ode(x*('diff(y,x,1))^2-(x*y+1)*'diff(y,x,1)+y,y,x), if TEMP=false then TEMP else substitute(y=y(x),TEMP)) raise NotImplementedError("Maxima was unable to solve this ODE.") else: raise NotImplementedError("Maxima was unable to solve this ODE. Consider to set option contrib_ode to True.")
# we produce string like this # (TEMP:ic2(ode2('diff(y,x,2)+2*'diff(y,x,1)+y-cos(x),y,x),x=0,y=3,'diff(y,x)=1),substitute(y=y(x),TEMP)) #fixed ic2 command from Maxima - we have to ensure that %k1, %k2 do not depend on variables, should be removed when fixed in Maxima noteqn(xa), noteqn(ya), noteqn(dya), boundtest('%k1,%k1), boundtest('%k2,%k2), \ temp: lhs(soln) - rhs(soln), \ TEMP_k:solve([subst([xa,ya],soln), subst([dya,xa], lhs(dya)=-subst(0,lhs(dya),diff(temp,lhs(xa)))/diff(temp,lhs(ya)))],[%k1,%k2]), \ if not freeof(lhs(ya),TEMP_k) or not freeof(lhs(xa),TEMP_k) then return (false), \ temp: maplist(lambda([zz], subst(zz,soln)), TEMP_k), \ if length(temp)=1 then return(first(temp)) else return(temp))") # we produce string like this # (TEMP:ic2(ode2('diff(y,x,2)+2*'diff(y,x,1)+y-cos(x),y,x),x=0,y=3,'diff(y,x)=1),substitute(y=y(x),TEMP)) raise NotImplementedError("Maxima was unable to solve this IVP. Remove the initial condition to get the general solution.") #fixed bc2 command from Maxima - we have to ensure that %k1, %k2 do not depend on variables, should be removed when fixed in Maxima noteqn(xa), noteqn(ya), noteqn(xb), noteqn(yb), boundtest('%k1,%k1), boundtest('%k2,%k2), \ TEMP_k:solve([subst([xa,ya],soln), subst([xb,yb],soln)], [%k1,%k2]), \ if not freeof(lhs(ya),TEMP_k) or not freeof(lhs(xa),TEMP_k) then return (false), \ temp: maplist(lambda([zz], subst(zz,soln)),TEMP_k), \ if length(temp)=1 then return(first(temp)) else return(temp))") # we produce string like this # (TEMP:bc2(ode2('diff(y,x,2)+2*'diff(y,x,1)+y-cos(x),y,x),x=0,y=3,x=%pi/2,y=2),substitute(y=y(x),TEMP)) raise NotImplementedError("Maxima was unable to solve this BVP. Remove the initial condition to get the general solution.")
# Remark: Here we do not check that the right hand side does not depend on dvar. # This probably will not happen for solutions obtained via ode2, anyway. else:
#def desolve_laplace2(de,vars,ics=None): ## """ ## Solves an ODE using laplace transforms via maxima. Initial conditions ## are optional.
## INPUT: ## de -- a lambda expression representing the ODE ## (eg, de = "diff(f(x),x,2)=diff(f(x),x)+sin(x)") ## vars -- a list of strings representing the variables ## (eg, vars = ["x","f"], if x is the independent ## variable and f is the dependent variable) ## ics -- a list of numbers representing initial conditions, ## with symbols allowed which are represented by strings ## (eg, f(0)=1, f'(0)=2 is ics = [0,1,2])
## EXAMPLES::
## sage: from sage.calculus.desolvers import desolve_laplace ## sage: x = var('x') ## sage: f = function('f')(x) ## sage: de = lambda y: diff(y,x,x) - 2*diff(y,x) + y ## sage: desolve_laplace(de(f(x)),[f,x]) ## #x*%e^x*(?%at('diff('f(x),x,1),x=0))-'f(0)*x*%e^x+'f(0)*%e^x ## sage: desolve_laplace(de(f(x)),[f,x],[0,1,2]) ## IC option does not work ## #x*%e^x*(?%at('diff('f(x),x,1),x=0))-'f(0)*x*%e^x+'f(0)*%e^x
## AUTHOR: David Joyner (1st version 1-2006, 8-2007) ## """ # ######## this method seems reasonable but doesn't work for some reason # name0 = vars[0]._repr_()[0:(len(vars[0]._repr_())-2-len(str(vars[1])))] # name1 = str(vars[1]) # #maxima("de:"+de+";") # if ics is not None: # ic0 = maxima("ic:"+str(vars[1])+"="+str(ics[0])) # d = len(ics) # for i in range(d-1): # maxima(vars[0](vars[1])).diff(vars[1],i).atvalue(ic0,ics[i+1]) # de0 = de._maxima_() # #cmd = "desolve("+de+","+vars[1]+"("+vars[0]+"));" # #return maxima.eval(cmd) # return de0.desolve(vars[0]).rhs()
def desolve_laplace(de, dvar, ics=None, ivar=None): """ Solve an ODE using Laplace transforms. Initial conditions are optional.
INPUT:
- ``de`` - a lambda expression representing the ODE (e.g. ``de = diff(y,x,2) == diff(y,x)+sin(x)``)
- ``dvar`` - the dependent variable (e.g. ``y``)
- ``ivar`` - (optional) the independent variable (hereafter called `x`), which must be specified if there is more than one independent variable in the equation.
- ``ics`` - a list of numbers representing initial conditions, (e.g. ``f(0)=1``, ``f'(0)=2`` corresponds to ``ics = [0,1,2]``)
OUTPUT:
Solution of the ODE as symbolic expression
EXAMPLES::
sage: u=function('u')(x) sage: eq = diff(u,x) - exp(-x) - u == 0 sage: desolve_laplace(eq,u) 1/2*(2*u(0) + 1)*e^x - 1/2*e^(-x)
We can use initial conditions::
sage: desolve_laplace(eq,u,ics=[0,3]) -1/2*e^(-x) + 7/2*e^x
The initial conditions do not persist in the system (as they persisted in previous versions)::
sage: desolve_laplace(eq,u) 1/2*(2*u(0) + 1)*e^x - 1/2*e^(-x)
::
sage: f=function('f')(x) sage: eq = diff(f,x) + f == 0 sage: desolve_laplace(eq,f,[0,1]) e^(-x)
::
sage: x = var('x') sage: f = function('f')(x) sage: de = diff(f,x,x) - 2*diff(f,x) + f sage: desolve_laplace(de,f) -x*e^x*f(0) + x*e^x*D[0](f)(0) + e^x*f(0)
::
sage: desolve_laplace(de,f,ics=[0,1,2]) x*e^x + e^x
TESTS:
Check that :trac:`4839` is fixed::
sage: t = var('t') sage: x = function('x')(t) sage: soln = desolve_laplace(diff(x,t)+x==1, x, ics=[0,2]) sage: soln e^(-t) + 1
::
sage: soln(t=3) e^(-3) + 1
AUTHORS:
- David Joyner (1-2006,8-2007)
- Robert Marik (10-2009) """ #This is the original code from David Joyner (inputs and outputs strings) #maxima("de:"+de._repr_()+"=0;") #if ics is not None: # d = len(ics) # for i in range(0,d-1): # ic = "atvalue(diff("+vars[1]+"("+vars[0]+"),"+str(vars[0])+","+str(i)+"),"+str(vars[0])+"="+str(ics[0])+","+str(ics[1+i])+")" # maxima(ic) # #cmd = "desolve("+de._repr_()+","+vars[1]+"("+vars[0]+"));" #return maxima(cmd).rhs()._maxima_init_()
## verbatim copy from desolve - begin raise ValueError("You have to declare dependent variable as a function evaluated at the independent variable, eg. y=function('y')(x)") # for backwards compatibility dvar, ivar = dvar raise ValueError("Unable to determine independent variable, please specify.") ## verbatim copy from desolve - end
raise NotImplementedError("Maxima was unable to solve this ODE.")
def desolve_system(des, vars, ics=None, ivar=None): """ Solve a system of any size of 1st order ODEs. Initial conditions are optional.
One dimensional systems are passed to :meth:`desolve_laplace`.
INPUT:
- ``des`` - list of ODEs
- ``vars`` - list of dependent variables
- ``ics`` - (optional) list of initial values for ``ivar`` and ``vars``. If ``ics`` is defined, it should provide initial conditions for each variable, otherwise an exception would be raised.
- ``ivar`` - (optional) the independent variable, which must be specified if there is more than one independent variable in the equation.
EXAMPLES::
sage: t = var('t') sage: x = function('x')(t) sage: y = function('y')(t) sage: de1 = diff(x,t) + y - 1 == 0 sage: de2 = diff(y,t) - x + 1 == 0 sage: desolve_system([de1, de2], [x,y]) [x(t) == (x(0) - 1)*cos(t) - (y(0) - 1)*sin(t) + 1, y(t) == (y(0) - 1)*cos(t) + (x(0) - 1)*sin(t) + 1]
Now we give some initial conditions::
sage: sol = desolve_system([de1, de2], [x,y], ics=[0,1,2]); sol [x(t) == -sin(t) + 1, y(t) == cos(t) + 1]
::
sage: solnx, solny = sol[0].rhs(), sol[1].rhs() sage: plot([solnx,solny],(0,1)) # not tested sage: parametric_plot((solnx,solny),(0,1)) # not tested
TESTS:
Check that :trac:`9823` is fixed::
sage: t = var('t') sage: x = function('x')(t) sage: de1 = diff(x,t) + 1 == 0 sage: desolve_system([de1], [x]) -t + x(0)
Check that :trac:`16568` is fixed::
sage: t = var('t') sage: x = function('x')(t) sage: y = function('y')(t) sage: de1 = diff(x,t) + y - 1 == 0 sage: de2 = diff(y,t) - x + 1 == 0 sage: des = [de1,de2] sage: ics = [0,1,-1] sage: vars = [x,y] sage: sol = desolve_system(des, vars, ics); sol [x(t) == 2*sin(t) + 1, y(t) == -2*cos(t) + 1]
::
sage: solx, soly = sol[0].rhs(), sol[1].rhs() sage: RR(solx(t=3)) 1.28224001611973
::
sage: P1 = plot([solx,soly], (0,1)) sage: P2 = parametric_plot((solx,soly), (0,1))
Now type ``show(P1)``, ``show(P2)`` to view these plots.
Check that :trac:`9824` is fixed::
sage: t = var('t') sage: epsilon = var('epsilon') sage: x1 = function('x1')(t) sage: x2 = function('x2')(t) sage: de1 = diff(x1,t) == epsilon sage: de2 = diff(x2,t) == -2 sage: desolve_system([de1, de2], [x1, x2], ivar=t) [x1(t) == epsilon*t + x1(0), x2(t) == -2*t + x2(0)] sage: desolve_system([de1, de2], [x1, x2], ics=[1,1], ivar=t) Traceback (most recent call last): ... ValueError: Initial conditions aren't complete: number of vars is different from number of dependent variables. Got ics = [1, 1], vars = [x1(t), x2(t)]
AUTHORS:
- Robert Bradshaw (10-2008) - Sergey Bykov (10-2014) """
raise ValueError("Unable to determine independent variable, please specify.") raise NotImplementedError("Maxima was unable to solve this system.")
@rename_keyword(deprecation=6094, method="algorithm") def eulers_method(f,x0,y0,h,x1,algorithm="table"): r""" This implements Euler's method for finding numerically the solution of the 1st order ODE `y' = f(x,y)`, `y(a)=c`. The ``x`` column of the table increments from `x_0` to `x_1` by `h` (so `(x_1-x_0)/h` must be an integer). In the ``y`` column, the new `y`-value equals the old `y`-value plus the corresponding entry in the last column.
.. NOTE::
This function is for pedagogical purposes only.
EXAMPLES::
sage: from sage.calculus.desolvers import eulers_method sage: x,y = PolynomialRing(QQ,2,"xy").gens() sage: eulers_method(5*x+y-5,0,1,1/2,1) x y h*f(x,y) 0 1 -2 1/2 -1 -7/4 1 -11/4 -11/8
::
sage: x,y = PolynomialRing(QQ,2,"xy").gens() sage: eulers_method(5*x+y-5,0,1,1/2,1,algorithm="none") [[0, 1], [1/2, -1], [1, -11/4], [3/2, -33/8]]
::
sage: RR = RealField(sci_not=0, prec=4, rnd='RNDU') sage: x,y = PolynomialRing(RR,2,"xy").gens() sage: eulers_method(5*x+y-5,0,1,1/2,1,algorithm="None") [[0, 1], [1/2, -1.0], [1, -2.7], [3/2, -4.0]]
::
sage: RR = RealField(sci_not=0, prec=4, rnd='RNDU') sage: x,y=PolynomialRing(RR,2,"xy").gens() sage: eulers_method(5*x+y-5,0,1,1/2,1) x y h*f(x,y) 0 1 -2.0 1/2 -1.0 -1.7 1 -2.7 -1.3
::
sage: x,y=PolynomialRing(QQ,2,"xy").gens() sage: eulers_method(5*x+y-5,1,1,1/3,2) x y h*f(x,y) 1 1 1/3 4/3 4/3 1 5/3 7/3 17/9 2 38/9 83/27
::
sage: eulers_method(5*x+y-5,0,1,1/2,1,algorithm="none") [[0, 1], [1/2, -1], [1, -11/4], [3/2, -33/8]]
::
sage: pts = eulers_method(5*x+y-5,0,1,1/2,1,algorithm="none") sage: P1 = list_plot(pts) sage: P2 = line(pts) sage: (P1+P2).show()
AUTHORS:
- David Joyner """
@rename_keyword(deprecation=6094, method="algorithm") def eulers_method_2x2(f,g, t0, x0, y0, h, t1,algorithm="table"): r""" This implements Euler's method for finding numerically the solution of the 1st order system of two ODEs
.. MATH::
\begin{aligned} x' &= f(t, x, y), x(t_0)=x_0 \\ y' &= g(t, x, y), y(t_0)=y_0. \end{aligned}
The ``t`` column of the table increments from `t_0` to `t_1` by `h` (so `\frac{t_1-t_0}{h}` must be an integer). In the ``x`` column, the new `x`-value equals the old `x`-value plus the corresponding entry in the next (third) column. In the ``y`` column, the new `y`-value equals the old `y`-value plus the corresponding entry in the next (last) column.
.. NOTE::
This function is for pedagogical purposes only.
EXAMPLES::
sage: from sage.calculus.desolvers import eulers_method_2x2 sage: t, x, y = PolynomialRing(QQ,3,"txy").gens() sage: f = x+y+t; g = x-y sage: eulers_method_2x2(f,g, 0, 0, 0, 1/3, 1,algorithm="none") [[0, 0, 0], [1/3, 0, 0], [2/3, 1/9, 0], [1, 10/27, 1/27], [4/3, 68/81, 4/27]]
::
sage: eulers_method_2x2(f,g, 0, 0, 0, 1/3, 1) t x h*f(t,x,y) y h*g(t,x,y) 0 0 0 0 0 1/3 0 1/9 0 0 2/3 1/9 7/27 0 1/27 1 10/27 38/81 1/27 1/9
::
sage: RR = RealField(sci_not=0, prec=4, rnd='RNDU') sage: t,x,y=PolynomialRing(RR,3,"txy").gens() sage: f = x+y+t; g = x-y sage: eulers_method_2x2(f,g, 0, 0, 0, 1/3, 1) t x h*f(t,x,y) y h*g(t,x,y) 0 0 0.00 0 0.00 1/3 0.00 0.13 0.00 0.00 2/3 0.13 0.29 0.00 0.043 1 0.41 0.57 0.043 0.15
To numerically approximate `y(1)`, where `(1+t^2)y''+y'-y=0`, `y(0)=1`, `y'(0)=-1`, using 4 steps of Euler's method, first convert to a system: `y_1' = y_2`, `y_1(0)=1`; `y_2' = \frac{y_1-y_2}{1+t^2}`, `y_2(0)=-1`.::
sage: RR = RealField(sci_not=0, prec=4, rnd='RNDU') sage: t, x, y=PolynomialRing(RR,3,"txy").gens() sage: f = y; g = (x-y)/(1+t^2) sage: eulers_method_2x2(f,g, 0, 1, -1, 1/4, 1) t x h*f(t,x,y) y h*g(t,x,y) 0 1 -0.25 -1 0.50 1/4 0.75 -0.12 -0.50 0.29 1/2 0.63 -0.054 -0.21 0.19 3/4 0.63 -0.0078 -0.031 0.11 1 0.63 0.020 0.079 0.071
To numerically approximate `y(1)`, where `y''+ty'+y=0`, `y(0)=1`, `y'(0)=0`::
sage: t,x,y=PolynomialRing(RR,3,"txy").gens() sage: f = y; g = -x-y*t sage: eulers_method_2x2(f,g, 0, 1, 0, 1/4, 1) t x h*f(t,x,y) y h*g(t,x,y) 0 1 0.00 0 -0.25 1/4 1.0 -0.062 -0.25 -0.23 1/2 0.94 -0.11 -0.46 -0.17 3/4 0.88 -0.15 -0.62 -0.10 1 0.75 -0.17 -0.68 -0.015
AUTHORS:
- David Joyner """
def eulers_method_2x2_plot(f,g, t0, x0, y0, h, t1): r""" Plot solution of ODE.
This plots the solution in the rectangle with sides ``(xrange[0],xrange[1])`` and ``(yrange[0],yrange[1])``, and plots using Euler's method the numerical solution of the 1st order ODEs `x' = f(t,x,y)`, `x(a)=x_0`, `y' = g(t,x,y)`, `y(a) = y_0`.
.. NOTE::
This function is for pedagogical purposes only.
EXAMPLES:
The following example plots the solution to `\theta''+\sin(\theta)=0`, `\theta(0)=\frac 34`, `\theta'(0) = 0`. Type ``P[0].show()`` to plot the solution, ``(P[0]+P[1]).show()`` to plot `(t,\theta(t))` and `(t,\theta'(t))`::
sage: from sage.calculus.desolvers import eulers_method_2x2_plot sage: f = lambda z : z[2]; g = lambda z : -sin(z[1]) sage: P = eulers_method_2x2_plot(f,g, 0.0, 0.75, 0.0, 0.1, 1.0) """
def desolve_rk4_determine_bounds(ics,end_points=None): """ Used to determine bounds for numerical integration.
- If ``end_points`` is None, the interval for integration is from ``ics[0]`` to ``ics[0]+10``
- If ``end_points`` is ``a`` or ``[a]``, the interval for integration is from ``min(ics[0],a)`` to ``max(ics[0],a)``
- If ``end_points`` is ``[a,b]``, the interval for integration is from ``min(ics[0],a)`` to ``max(ics[0],b)``
EXAMPLES::
sage: from sage.calculus.desolvers import desolve_rk4_determine_bounds sage: desolve_rk4_determine_bounds([0,2],1) (0, 1)
::
sage: desolve_rk4_determine_bounds([0,2]) (0, 10)
::
sage: desolve_rk4_determine_bounds([0,2],[-2]) (-2, 0)
::
sage: desolve_rk4_determine_bounds([0,2],[-2,4]) (-2, 4)
""" else:
def desolve_rk4(de, dvar, ics=None, ivar=None, end_points=None, step=0.1, output='list', **kwds): """ Solve numerically one first-order ordinary differential equation.
INPUT:
Input is similar to ``desolve`` command. The differential equation can be written in a form close to the ``plot_slope_field`` or ``desolve`` command.
- Variant 1 (function in two variables)
- ``de`` - right hand side, i.e. the function `f(x,y)` from ODE `y'=f(x,y)`
- ``dvar`` - dependent variable (symbolic variable declared by var)
- Variant 2 (symbolic equation)
- ``de`` - equation, including term with ``diff(y,x)``
- ``dvar`` - dependent variable (declared as function of independent variable)
- Other parameters
- ``ivar`` - should be specified, if there are more variables or if the equation is autonomous
- ``ics`` - initial conditions in the form ``[x0,y0]``
- ``end_points`` - the end points of the interval
- if ``end_points`` is a or [a], we integrate between ``min(ics[0],a)`` and ``max(ics[0],a)`` - if ``end_points`` is None, we use ``end_points=ics[0]+10``
- if end_points is [a,b] we integrate between ``min(ics[0], a)`` and ``max(ics[0], b)``
- ``step`` - (optional, default:0.1) the length of the step (positive number)
- ``output`` - (optional, default: ``'list'``) one of ``'list'``, ``'plot'``, ``'slope_field'`` (graph of the solution with slope field)
OUTPUT:
Return a list of points, or plot produced by ``list_plot``, optionally with slope field.
.. SEEALSO::
:func:`ode_solver`.
EXAMPLES::
sage: from sage.calculus.desolvers import desolve_rk4
Variant 2 for input - more common in numerics::
sage: x,y = var('x,y') sage: desolve_rk4(x*y*(2-y),y,ics=[0,1],end_points=1,step=0.5) [[0, 1], [0.5, 1.12419127424558], [1.0, 1.461590162288825]]
Variant 1 for input - we can pass ODE in the form used by desolve function In this example we integrate backwards, since ``end_points < ics[0]``::
sage: y = function('y')(x) sage: desolve_rk4(diff(y,x)+y*(y-1) == x-2,y,ics=[1,1],step=0.5, end_points=0) [[0.0, 8.904257108962112], [0.5, 1.909327945361535], [1, 1]]
Here we show how to plot simple pictures. For more advanced applications use list_plot instead. To see the resulting picture use ``show(P)`` in Sage notebook. ::
sage: x,y = var('x,y') sage: P=desolve_rk4(y*(2-y),y,ics=[0,.1],ivar=x,output='slope_field',end_points=[-4,6],thickness=3)
ALGORITHM:
4th order Runge-Kutta method. Wrapper for command ``rk`` in Maxima's dynamics package. Perhaps could be faster by using fast_float instead.
AUTHORS:
- Robert Marik (10-2009) """ raise ValueError("No initial conditions, specify with ics=[x0,y0].")
raise ValueError("Unable to determine independent variable, please specify.")
# consider to add warning if the solution is not unique raise NotImplementedError("Sorry, cannot find explicit formula for right-hand side of the ODE.") else:
"%(de0.str(),'_SAGE_VAR_'+str(dummy_dvar),str(ics[1]),'_SAGE_VAR_'+str(ivar),str(ics[0]),lower_bound,-step) "%(de0.str(),'_SAGE_VAR_'+str(dummy_dvar),str(ics[1]),'_SAGE_VAR_'+str(ivar),str(ics[0]),upper_bound,step)
return R
raise ValueError("Option output should be 'list', 'plot' or 'slope_field'.")
def desolve_system_rk4(des, vars, ics=None, ivar=None, end_points=None, step=0.1): r""" Solve numerically a system of first-order ordinary differential equations using the 4th order Runge-Kutta method. Wrapper for Maxima command ``rk``.
INPUT:
input is similar to desolve_system and desolve_rk4 commands
- ``des`` - right hand sides of the system
- ``vars`` - dependent variables
- ``ivar`` - (optional) should be specified, if there are more variables or if the equation is autonomous and the independent variable is missing
- ``ics`` - initial conditions in the form ``[x0,y01,y02,y03,....]``
- ``end_points`` - the end points of the interval
- if ``end_points`` is a or [a], we integrate on between ``min(ics[0], a)`` and ``max(ics[0], a)`` - if ``end_points`` is None, we use ``end_points=ics[0]+10``
- if ``end_points`` is [a,b] we integrate on between ``min(ics[0], a)`` and ``max(ics[0], b)``
- ``step`` -- (optional, default: 0.1) the length of the step
OUTPUT:
Return a list of points.
.. SEEALSO::
:func:`ode_solver`.
EXAMPLES::
sage: from sage.calculus.desolvers import desolve_system_rk4
Lotka Volterra system::
sage: from sage.calculus.desolvers import desolve_system_rk4 sage: x,y,t=var('x y t') sage: P=desolve_system_rk4([x*(1-y),-y*(1-x)],[x,y],ics=[0,0.5,2],ivar=t,end_points=20) sage: Q=[ [i,j] for i,j,k in P] sage: LP=list_plot(Q)
sage: Q=[ [j,k] for i,j,k in P] sage: LP=list_plot(Q)
ALGORITHM:
4th order Runge-Kutta method. Wrapper for command ``rk`` in Maxima's dynamics package. Perhaps could be faster by using ``fast_float`` instead.
AUTHOR:
- Robert Marik (10-2009) """
raise ValueError("No initial conditions, specify with ics=[x0,y01,y02,...].")
ivars = ivars - set(vars) if len(ivars) != 1: raise ValueError("Unable to determine independent variable, please specify.") ivar = list(ivars)[0]
cmd="rk(%s,%s,%s,[%s,%s,%s,%s])\ "%(desstr,varstr,icstr,'_SAGE_VAR_'+str(ivar),str(x0),lower_bound,-step) sol_1=maxima(cmd).sage() sol_1.pop(0) sol_1.reverse() "%(desstr,varstr,icstr,'_SAGE_VAR_'+str(ivar),str(x0),upper_bound,step)
def desolve_odeint(des, ics, times, dvars, ivar=None, compute_jac=False, args=() , rtol=None, atol=None, tcrit=None, h0=0.0, hmax=0.0, hmin=0.0, ixpr=0 , mxstep=0, mxhnil=0, mxordn=12, mxords=5, printmessg=0): r""" Solve numerically a system of first-order ordinary differential equations using ``odeint`` from scipy.integrate module.
INPUT:
- ``des`` -- right hand sides of the system
- ``ics`` -- initial conditions
- ``times`` -- a sequence of time points in which the solution must be found
- ``dvars`` -- dependent variables. ATTENTION: the order must be the same as in ``des``, that means: ``d(dvars[i])/dt=des[i]``
- ``ivar`` -- independent variable, optional.
- ``compute_jac`` -- boolean. If True, the Jacobian of des is computed and used during the integration of Stiff Systems. Default value is False.
Other Parameters (taken from the documentation of odeint function from `scipy.integrate module. <https://docs.scipy.org/doc/scipy/reference/integrate.html#module-scipy.integrate>`_)
- ``rtol``, ``atol`` : float The input parameters ``rtol`` and ``atol`` determine the error control performed by the solver. The solver will control the vector, `e`, of estimated local errors in `y`, according to an inequality of the form:
max-norm of (e / ewt) <= 1
where ewt is a vector of positive error weights computed as:
ewt = rtol * abs(y) + atol
``rtol`` and ``atol`` can be either vectors the same length as `y` or scalars.
- ``tcrit`` : array Vector of critical points (e.g. singularities) where integration care should be taken.
- ``h0`` : float, (0: solver-determined) The step size to be attempted on the first step.
- ``hmax`` : float, (0: solver-determined) The maximum absolute step size allowed.
- ``hmin`` : float, (0: solver-determined) The minimum absolute step size allowed.
- ``ixpr`` : boolean. Whether to generate extra printing at method switches.
- ``mxstep`` : integer, (0: solver-determined) Maximum number of (internally defined) steps allowed for each integration point in t.
- ``mxhnil`` : integer, (0: solver-determined) Maximum number of messages printed.
- ``mxordn`` : integer, (0: solver-determined) Maximum order to be allowed for the nonstiff (Adams) method.
- ``mxords`` : integer, (0: solver-determined) Maximum order to be allowed for the stiff (BDF) method.
OUTPUT:
Return a list with the solution of the system at each time in ``times``.
EXAMPLES:
Lotka Volterra Equations::
sage: from sage.calculus.desolvers import desolve_odeint sage: x,y=var('x,y') sage: f=[x*(1-y),-y*(1-x)] sage: sol=desolve_odeint(f,[0.5,2],srange(0,10,0.1),[x,y]) sage: p=line(zip(sol[:,0],sol[:,1])) sage: p.show()
Lorenz Equations::
sage: x,y,z=var('x,y,z') sage: # Next we define the parameters sage: sigma=10 sage: rho=28 sage: beta=8/3 sage: # The Lorenz equations sage: lorenz=[sigma*(y-x),x*(rho-z)-y,x*y-beta*z] sage: # Time and initial conditions sage: times=srange(0,50.05,0.05) sage: ics=[0,1,1] sage: sol=desolve_odeint(lorenz,ics,times,[x,y,z],rtol=1e-13,atol=1e-14)
One-dimensional Stiff system::
sage: y= var('y') sage: epsilon=0.01 sage: f=y^2*(1-y) sage: ic=epsilon sage: t=srange(0,2/epsilon,1) sage: sol=desolve_odeint(f,ic,t,y,rtol=1e-9,atol=1e-10,compute_jac=True) sage: p=points(zip(t,sol)) sage: p.show()
Another Stiff system with some optional parameters with no default value::
sage: y1,y2,y3=var('y1,y2,y3') sage: f1=77.27*(y2+y1*(1-8.375*1e-6*y1-y2)) sage: f2=1/77.27*(y3-(1+y1)*y2) sage: f3=0.16*(y1-y3) sage: f=[f1,f2,f3] sage: ci=[0.2,0.4,0.7] sage: t=srange(0,10,0.01) sage: v=[y1,y2,y3] sage: sol=desolve_odeint(f,ci,t,v,rtol=1e-3,atol=1e-4,h0=0.1,hmax=1,hmin=1e-4,mxstep=1000,mxords=17)
AUTHOR:
- Oriol Castejon (05-2010) """
des=des[0] dvars=dvars[0] else: else:
ivar = ivars.pop() else: raise ValueError("Unable to determine independent variable, please specify.")
# one-dimensional systems: Dfun=None else:
# n-dimensional systems: else:
else: J = jacobian(des,dvars) J = [list(v) for v in J] J = fast_float(J,*variabs) def Dfun(y,t): v = list(y[:]) v.append(t) return [[element(*v) for element in row] for row in J]
tcrit=tcrit, h0=h0, hmax=hmax, hmin=hmin, ixpr=ixpr, mxstep=mxstep, mxhnil=mxhnil, mxordn=mxordn, mxords=mxords, printmessg=printmessg)
def desolve_mintides(f, ics, initial, final, delta, tolrel=1e-16, tolabs=1e-16): r""" Solve numerically a system of first order differential equations using the taylor series integrator implemented in mintides.
INPUT:
- ``f`` -- symbolic function. Its first argument will be the independent variable. Its output should be de derivatives of the dependent variables.
- ``ics`` -- a list or tuple with the initial conditions.
- ``initial`` -- the starting value for the independent variable.
- ``final`` -- the final value for the independent value.
- ``delta`` -- the size of the steps in the output.
- ``tolrel`` -- the relative tolerance for the method.
- ``tolabs`` -- the absolute tolerance for the method.
OUTPUT:
- A list with the positions of the IVP.
EXAMPLES:
We integrate a periodic orbit of the Kepler problem along 50 periods::
sage: var('t,x,y,X,Y') (t, x, y, X, Y) sage: f(t,x,y,X,Y)=[X, Y, -x/(x^2+y^2)^(3/2), -y/(x^2+y^2)^(3/2)] sage: ics = [0.8, 0, 0, 1.22474487139159] sage: t = 100*pi sage: sol = desolve_mintides(f, ics, 0, t, t, 1e-12, 1e-12) # optional -tides sage: sol # optional -tides # abs tol 1e-5 [[0.000000000000000, 0.800000000000000, 0.000000000000000, 0.000000000000000, 1.22474487139159], [314.159265358979, 0.800000000028622, -5.91973525754241e-9, 7.56887091890590e-9, 1.22474487136329]]
ALGORITHM:
Uses TIDES.
REFERENCES:
- A. Abad, R. Barrio, F. Blesa, M. Rodriguez. Algorithm 924. *ACM Transactions on Mathematical Software* , *39* (1), 1-28.
- A. Abad, R. Barrio, F. Blesa, M. Rodriguez. `TIDES tutorial: Integrating ODEs by using the Taylor Series Method. <http://www.unizar.es/acz/05Publicaciones/Monografias/MonografiasPublicadas/Monografia36/IndMonogr36.htm>`_ """ import subprocess if subprocess.call('command -v gcc', shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE): raise RuntimeError('Unable to run because gcc cannot be found') from sage.interfaces.tides import genfiles_mintides from sage.misc.temporary_file import tmp_dir tempdir = tmp_dir() intfile = os.path.join(tempdir, 'integrator.c') drfile = os.path.join(tempdir ,'driver.c') fileoutput = os.path.join(tempdir, 'output') runmefile = os.path.join(tempdir, 'runme') genfiles_mintides(intfile, drfile, f, [N(_) for _ in ics], N(initial), N(final), N(delta), N(tolrel), N(tolabs), fileoutput) subprocess.check_call('gcc -o ' + runmefile + ' ' + os.path.join(tempdir, '*.c ') + os.path.join('$SAGE_LOCAL','lib','libTIDES.a') + ' $LDFLAGS ' + os.path.join('-L$SAGE_LOCAL','lib ') +' -lm -O2 ' + os.path.join('-I$SAGE_LOCAL','include '), shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE) subprocess.check_call(os.path.join(tempdir, 'runme'), shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE) outfile = open(fileoutput) res = outfile.readlines() outfile.close() for i in range(len(res)): res[i] = [RealField()(_) for _ in res[i].split(' ') if len(_) > 2] shutil.rmtree(tempdir) return res
def desolve_tides_mpfr(f, ics, initial, final, delta, tolrel=1e-16, tolabs=1e-16, digits=50): r""" Solve numerically a system of first order differential equations using the taylor series integrator in arbitrary precision implemented in tides.
INPUT:
- ``f`` -- symbolic function. Its first argument will be the independent variable. Its output should be de derivatives of the dependent variables.
- ``ics`` -- a list or tuple with the initial conditions.
- ``initial`` -- the starting value for the independent variable.
- ``final`` -- the final value for the independent value.
- ``delta`` -- the size of the steps in the output.
- ``tolrel`` -- the relative tolerance for the method.
- ``tolabs`` -- the absolute tolerance for the method.
- ``digits`` -- the digits of precision used in the computation.
OUTPUT:
- A list with the positions of the IVP.
EXAMPLES:
We integrate the Lorenz equations with Salztman values for the parameters along 10 periodic orbits with 100 digits of precision::
sage: var('t,x,y,z') (t, x, y, z) sage: s = 10 sage: r = 28 sage: b = 8/3 sage: f(t,x,y,z)= [s*(y-x),x*(r-z)-y,x*y-b*z] sage: x0 = -13.7636106821342005250144010543616538641008648540923684535378642921202827747268115852940239346395038284 sage: y0 = -19.5787519424517955388380414460095588661142400534276438649791334295426354746147526415973165506704676171 sage: z0 = 27 sage: T = 15.586522107161747275678702092126960705284805489972439358895215783190198756258880854355851082660142374 sage: sol = desolve_tides_mpfr(f, [x0, y0, z0],0 , T, T, 1e-100, 1e-100, 100) # optional - tides sage: sol # optional -tides # abs tol 1e-50 [[0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000, -13.7636106821342005250144010543616538641008648540923684535378642921202827747268115852940239346395038, -19.5787519424517955388380414460095588661142400534276438649791334295426354746147526415973165506704676, 27.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000], [15.5865221071617472756787020921269607052848054899724393588952157831901987562588808543558510826601424, -13.7636106821342005250144010543616538641008648540923684535378642921202827747268115852940239346315658, -19.5787519424517955388380414460095588661142400534276438649791334295426354746147526415973165506778440, 26.9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999636628]]
ALGORITHM:
Uses TIDES.
.. WARNING::
This requires the package tides.
REFERENCES:
.. [ABBR1] \A. Abad, R. Barrio, F. Blesa, M. Rodriguez. Algorithm 924. *ACM Transactions on Mathematical Software* , *39* (1), 1-28.
.. [ABBR2] \A. Abad, R. Barrio, F. Blesa, M. Rodriguez. `TIDES tutorial: Integrating ODEs by using the Taylor Series Method. <http://www.unizar.es/acz/05Publicaciones/Monografias/MonografiasPublicadas/Monografia36/IndMonogr36.htm>`_
""" import subprocess if subprocess.call('command -v gcc', shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE): raise RuntimeError('Unable to run because gcc cannot be found') from sage.interfaces.tides import genfiles_mpfr from sage.functions.other import ceil from sage.functions.log import log from sage.misc.temporary_file import tmp_dir tempdir = tmp_dir() intfile = os.path.join(tempdir, 'integrator.c') drfile = os.path.join(tempdir, 'driver.c') fileoutput = os.path.join(tempdir, 'output') runmefile = os.path.join(tempdir, 'runme') genfiles_mpfr(intfile, drfile, f, ics, initial, final, delta, [], [], digits, tolrel, tolabs, fileoutput) subprocess.check_call('gcc -o ' + runmefile + ' ' + os.path.join(tempdir, '*.c ') + os.path.join('$SAGE_LOCAL','lib','libTIDES.a') + ' $LDFLAGS ' + os.path.join('-L$SAGE_LOCAL','lib ') + '-lmpfr -lgmp -lm -O2 -w ' + os.path.join('-I$SAGE_LOCAL','include ') , shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE) subprocess.check_call(os.path.join(tempdir, 'runme'), shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE) outfile = open(fileoutput) res = outfile.readlines() outfile.close() for i in range(len(res)): res[i] = [RealField(ceil(digits*log(10,2)))(_) for _ in res[i].split(' ') if len(_) > 2] shutil.rmtree(tempdir) return res
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